Table from data in 'sortsrc.list'
| Filename |
Subroutine |
Description |
| abundances.c | AbundancesPrt | print all abundances, both gas phase and grains
|
| abundances.c | AbundancesSet | sets initial abundances after parameters are entered by reading input
|
| abundances.c | AbundancesTable | interpolate on table of points to do 'element table' command,
|
| abundances.c | PrtElem | print chemical composition at start of calculation
|
| abund_starburst.c | abund_starburst | generate abundance set from Fred Hamann's starburst evolution grid
|
| age_check.c | AgeCheck | check various timescales after calculation complete to confirm time steady OK
|
| assert_results.c | InitAssertResults | this must be called first, done at startup of ParseCommands
|
| assert_results.c | lgCheckAsserts | checks asserts, last thing cloudy calls, returns TRUE if all are ok, FALSE if problems
|
| assert_results.c | ParseAssertResults | - parse input stream
|
| atmdat_2photon.c | atmdat_2phot_rate | hydrogen two photon emission, including induced emission
|
| atmdat_2photon.c | atmdat_2phot_shapefunction | two photon emission function for hydrogen
|
| atmdat_3body.c | atmdat_3body | derive three-body recombination coefficients
|
| atmdat_3body.c | da | interpolate on three body recombination by Steve Cota
|
| atmdat_char_tran.c | ChargTranEval | fill in the HCharExcIonOf and Rec arrays with Kingdon's fitted CT with H
|
| atmdat_char_tran.c | ChargTranPun | punch charge transfer coef
|
| atmdat_char_tran.c | ChargTranSumHeat | sum net heating due to charge transfer, called in HeatSum
|
| atmdat_char_tran.c | HCTIon | H charge transfer ionization
|
| atmdat_char_tran.c | HCTRecom | H charge transfer recombination
|
| atmdat_char_tran.c | MakeHCTData | holds data for charge tranfer fits
|
| atmdat_coll_ion.c | atmdat_coll_ion | D Verner's routine to compute collisional ionization rate coefficients
|
| atmdat_dielrec_fe.c | atmdat_dielrec_fe | Dielectronic recombination rates for Fe from Arnaud & Raymond 1992
|
| atmdat_dielsupres.c | atmdat_DielSupres | derive scale factors for suppression of Burgess dielectronic recombination
|
| atmdat_HS_caseb.c | atmdat_HS_caseB | - interpolate on line emissivities from Storey & Hummer tables for hydrogen
|
| atmdat_h_photocs_fit.c | atmdat_hpfit | state specific photoionization cross sections for model hydrogen atom for any level up through NHYDRO_MAX_LEVEL defined 401L in cddefines.h
|
| atmdat_H_phot_cs.c | atmdat_H_phot_cs | -0 hydrogen cross sections
|
| atmdat_h_rad_rec.c | atmdat_H_rad_rec | calculates state-specific recombination rates for hydrogen and hydrogen-like ions
|
| atmdat_ligbar.c | ligbar | obtain collision strength for any Li-sequence line
|
| atmdat_lines_setup.c | lines_setup | convert level 1 and level 2 line parameters and pointers into internal form used by code, line data were read in by atmdat_readin
|
| atmdat_outer_shell.c | atmdat_outer_shell | determine outer shell, and statistical weights of that and higher ion, for any ion written by Dima Verner
|
| atmdat_phfit.c | atmdat_phfit | derive photoionization cross sectoins for first 30 elements
|
| atmdat_rad_rec.c | atmdat_rad_rec | calculates rates of radiative recombination for all ions
|
| atmdat_readin.c | atmdat_readin | read in some data files, but only if this is very first call, called by Cloudy
|
| atmdat_rec_lines.c | atmdat_rec_lines | effective recombination coefficients for lines of C, N, O, by D. Verner /
|
| atom_fe2ovr.c | atoms_fe2ovr | compute FeII overlap with Lya
|
| atom_fe2ovr.c | fe2par | evaluate FeII partition function
|
| atom_fe2ovr.c | Fe2_ovr_DataInit | storing energy levels for Fred's FeII ground
|
| atom_feii.c | AssertFeIIDep | called by assert feii depart coef command
|
| atom_feii.c | FeIIAccel | called by rt_line_driving to compute radiative acceleration due to FeII lines
|
| atom_feii.c | FeIIAddLines | save accumulated FeII intensities called by lineset4
|
| atom_feii.c | FeIIBandsCreate | returns number of feii bands
|
| atom_feii.c | FeIICollRatesBoltzmann | evaluate collision strenths, both interpolating on r-mat and creating g-bar find Boltzmann factors, evaluate collisional rate coefficients
|
| atom_feii.c | FeIIContCreate | create FeII continuum bins to add lines into ncell cells between wavelengths lambda low and high, returns number of cells used
|
| atom_feii.c | FeIICreate | read in needed data from file convert form of feii data, as read in from file within routine FeIICreate into physical form. called by atmdat_readin
|
| atom_feii.c | FeIIIntenZero | zero out intensity of FeII atom
|
| atom_feii.c | FeIILevelPops | main feii routine, called by CoolIron to evaluate iron cooling
|
| atom_feii.c | FeIILyaPump | find rate of Lya excitation of the FeII atom
|
| atom_feii.c | FeIIOvrLap | handle overlapping FeII lines
|
| atom_feii.c | FeIIPoint | called by ContCreatePointers to create pointers for lines in large FeII atom
|
| atom_feii.c | FeIIPrint | print feii information
|
| atom_feii.c | FeIIPrint | print output from large feii atom, called by prtzone
|
| atom_feii.c | FeIIPun1Depart | send the departure coef for physical level nPUN to unit ioPUN
|
| atom_feii.c | FeIIPunchLevels | punch feii levels and energies
|
| atom_feii.c | FeIIPunchLines | punch feii lines at end of calculation, if punch verner set, called by dopunch
|
| atom_feii.c | FeIIPunchLineStuff | include FeII lines in punched optical depths, etc, called from PunchLineStuff
|
| atom_feii.c | FeIIPunData | punch line data
|
| atom_feii.c | FeIIPunDepart | punch some departure coef for large atom, set with punch feii departure command
|
| atom_feii.c | FeIIPunPop | - punch level populations
|
| atom_feii.c | FeIIReset | reset some variables, called by zero
|
| atom_feii.c | FeIIRTMake | called by RT_line_all, does large FeII atom radiative transfer
|
| atom_feii.c | FeIISumBand | sum up large FeII emission over certain bands, called in lineset4
|
| atom_feii.c | FeIITauInc | called once per zone in RT_tau_inc to increment large FeII atom line optical depths
|
| atom_feii.c | FeIIZero | initialize some variables, called by zero one time before commands parsed
|
| atom_feii.c | FeII_Colden | maintain H2 column densities within X
|
| atom_feii.c | FeII_LineZero | zero out storage for large FeII atom, called by tauout
|
| atom_feii.c | FeII_OTS | do ots rates for FeII, called by RT_OTS
|
| atom_feii.c | FeII_RTOut | do outward rates for FeII, called by RT_diffuse
|
| atom_feii.c | FeII_RT_tau_reset | reset optical depths for large FeII atom, called by update after each iteration
|
| atom_feii.c | ParseAtomFeII | parse the atom FeII command
|
| atom_hyperfine.c | H21cm | computes rate for H 21 cm from upper to lower excitation by atomic hydrogen
|
| atom_hyperfine.c | H21cm_electron | compute H 21 cm rate from upper to lower excitation by electrons - call by CoolEvaluate
|
| atom_hyperfine.c | H21cm_H_atom | - evalutate H atom spin changing collision rate, called by CoolEvaluate
|
| atom_hyperfine.c | h21_t_ge_20 | compute rate for H 21 cm from upper to lower excitation by atomic hydrogen
|
| atom_hyperfine.c | h21_t_lt_20 | compute rate for H 21 cm from upper to lower excitation by atomic hydrogen
|
| atom_hyperfine.c | HyperfineCreat | establish space for hf arrays, reads atomic data from hyperfine.dat
|
| atom_hyperfine.c | HyperfineCS | - returns collision strengths for hyperfine struc transitions
|
| atom_level2.c | atom_level2 | do level population and cooling for two level atom, side effects: set elements of EmLine struc cooling via CoolAdd( chLab, (long)t->WLAng , t->cool); cooling derivative
|
| atom_level3.c | atom_level3 | compute three level atom, 10, 21, and 20 are line
|
| atom_leveln.c | atom_levelN | compute an arbitrary N level atom
|
| atom_oi.c | atom_oi | drive the solution of OI level populations, Ly-beta pumping
|
| atom_oi.c | oi_level_pops | get OI level population with Ly-beta pumping
|
| atom_pop2.c | atom_pop2 | do level population for simple two level atom, no radiative transfer
|
| atom_pop3.c | atom_pop3 | solve 3-level atom without radiative transfer, returns pops of level 2 and 3
|
| atom_pop5.c | atom_pop5 | do five level atom population and cooling
|
| atom_seq_beryllium.c | AtomSeqBeryllium | compute level populations and emissivity for Be-sequence ions
|
| atom_seq_boron.c | AtomSeqBoron | compute cooling from 5-level boron sequence model atom
|
| cddrive.c | cdCautions | print out all cautions after calculation, on arbitrary io unit
|
| cddrive.c | cdClosePunchFiles | closes all the punch files that have been used
|
| cddrive.c | cdColm | get the column density for a constituent
|
| cddrive.c | cdDate | - puts date of code into string
|
| cddrive.c | cdDLine | get the predicted emergent line intensity, also index for line in stack
|
| cddrive.c | cdDrive | main routine to call cloudy under all circumstances)
|
| cddrive.c | cdDrive | main routine to call cloudy under all circumstances)
|
| cddrive.c | cdEms | obtain the local emissivity for a line, for the last computed zone
|
| cddrive.c | cdEms_ip | obtain the local emissivity for a line with known index
|
| cddrive.c | cdErrors | produce summary of all warnings, cautions, etc, on arbitrary io unit
|
| cddrive.c | cdExecTime | any routine can call this, find the time [s] since cdInit was called ) prints all input commands into file
|
| cddrive.c | cdGetCooling_last | routine to query results and return cooling of last zone
|
| cddrive.c | cdGetDepth_depth | get depth structure from previous iteration
|
| cddrive.c | cdGetHeating_last | routine to query results and return heating of last zone
|
| cddrive.c | cdGetnZone | gets number of zones
|
| cddrive.c | cdGetPressure_last | routine to query results and return pressure of last zone
|
| cddrive.c | cdGetTemp_last | routine to query results and return temperature of last zone
|
| cddrive.c | cdIonFrac | get ionization fractions for a constituent
|
| cddrive.c | cdLine | get the predicted line intensity, also index for line in stack
|
| cddrive.c | cdLineListPunch | create a file with a list of all emission lines punched, and their index within the emission line stack
|
| cddrive.c | cdLine_ip | get the predicted line intensity, using index for line in stack
|
| cddrive.c | cdNoExec | call this routine to tell code not to actually execute
|
| cddrive.c | cdNotes | print stack of notes about current calculation
|
| cddrive.c | cdNwcns | get the number of cautions and warnings, to tell if calculation is ok
|
| cddrive.c | cdOutp | redirect output to arbitrary Fortran unit number
|
| cddrive.c | cdPrtWL | print line wavelengths in Angstroms in the standard format - just a wrapper
|
| cddrive.c | cdRead | routine to read in command lines when cloudy used as subroutine
|
| cddrive.c | cdReasonGeo | wrte why the model stopped and type of geometry on io file
|
| cddrive.c | cdSurprises | print out all surprises on arbitrary unit number
|
| cddrive.c | cdTalk | tells the code whether to print results or be silent
|
| cddrive.c | cdTemp | get mean electron temperature for any element
|
| cddrive.c | cdTimescales | returns thermal, recombination, and H2 foramtion timescales
|
| cddrive.c | cdVersion | produces string that gives version number of the code
|
| cddrive.c | cdWarnings | write all warnings entered into comment stack
|
| cddrive.c | debugLine | provides a debugging hook into the main line array
|
| cdgetlinelist.c | cdGetLineList | routine to read in master list of emission line wavelengths and ids, for generating loc grids, someday add cdGetNLRLineList
|
| cdinit.c | cdEXIT | exit handler to terminate calculation, called at end of calculation
|
| cdinit.c | cdInit | routine to initialize variables, called at start of calculation
|
| cdspec.c | cdSPEC | returns the spectrum needed for Keith Arnaud's XSPEC
|
| cdspec.c | Spec_cont | called by cdSPEC to generate actual spectrum
|
| cloudy.c | BadStart | announce that things are so bad the calculation cannot even start
|
| cloudy.c | cloudy | the main routine, this IS Cloudy, ret 0 normal exit, 1 error exit, called by maincl when used as standalone program
|
| cont_createmesh.c | ChckFill | perform sanity check confirming that the energy array has been properly filled
|
| cont_createmesh.c | ContCreateMesh | calls fill to set up continuum energy mesh if first call, otherwise reset to original mesh
|
| cont_createmesh.c | fill | define the continuum energy grid over a specified range
|
| cont_createmesh.c | read_continuum_mesh | read the continuum definition from the file continuum_mesh.dat
|
| cont_createmesh.c | rfield_opac_malloc | MALLOC space for opacity arrays
|
| cont_createpointers.c | ContBandsCreate | - read set of continuum bands to enter total emission into line stack
|
| cont_createpointers.c | ContCreatePointers | set up pointers for lines and continua called by cloudy after input read in and continuum mesh has been set
|
| cont_createpointers.c | fiddle | adjust energy bounds of certain cells so that match ionization edges exactly
|
| cont_createpointers.c | ipShells | assign continuum energy pointers to shells for all atoms, called by ContCreatePointers
|
| cont_createpointers.c | LimitSh | sets upper energy limit to subshell integrations
|
| cont_ffun.c | ffun | evaluate total flux for sum of all continuum sources
|
| cont_ffun.c | ffun1 | derive flux at a specific energy, for one continuum
|
| cont_ffun.c | ReadSB99 | called to work the table starburst command
|
| cont_ffun.c | ReadTable | called by TABLE READ to read in continuum from PUNCH TRANSMITTED CONTINUUM
|
| cont_gammas.c | GammaBn | evaluate photoionization rate for single shell with induced recomb
|
| cont_gammas.c | GammaBnPL | evaluate photoionization rate for single shell with induced recomb
|
| cont_gammas.c | GammaK | evaluate photoionization rate for single shell
|
| cont_gammas.c | GammaPL | evaluate photoionization rate for power law photo cross section
|
| cont_gammas.c | GammaPrt | special version of gamma function to print strong contributors
|
| cont_gammas.c | GammaPrtRate | print photo rates for all shells of a ion and element
|
| cont_gammas.c | GammaPrtShells | for the element nelem and ion, print total photo rate, subshells, and call GamaPrt for important subshells
|
| cont_ipoint.c | ipContEnergy | generate unique pointer to energy within continuum array continuum energy in Rydbergs
|
| cont_ipoint.c | ipFineCont | returns array index within fine energy mesh
|
| cont_ipoint.c | ipLineEnergy | generate unique pointer to line energy within energy mesh line energy in Rydbergs
|
| cont_ipoint.c | ipoint | returns pointer to any energy within energy mesh
|
| cont_negative.c | ContNegative | sanity check for negative continuum intensities
|
| cont_pump.c | ContPump | local continuum pumping rate radiative transfer for all lines
|
| cont_pump.c | con_pump_op | routine used to get continuum pumping of lines used in ContPump in call to qg32
|
| cont_pump.c | vfun | approximate form of Voit function
|
| cont_setintensity.c | conorm | normalize continuum to proper intensity
|
| cont_setintensity.c | ContSetIntensity | derive intensity of incident continuum
|
| cont_setintensity.c | extin | do extinction of incident continuum as set by extinguish command
|
| cont_setintensity.c | pintr | integrates L for any continuum between two limits, used for normalization
|
| cont_setintensity.c | ptrcer | show continuum pointers in real time following drive pointers command
|
| cont_setintensity.c | qintr | integrates Q for any continuum between two limits, used for normalization
|
| cont_setintensity.c | sumcon | sums L and Q for net incident continuum
|
| conv_base.c | ConvBase | main routine to drive ionization solution for all species, find total opacity called by ConvIoniz
|
| conv_base.c | lgConverg | check whether ionization of element nelem has converged
|
| conv_eden_ioniz.c | ConvEdenIoniz | called by ConvTempIonz, calls ConvIoniz solving for eden
|
| conv_eden_ioniz.c | lgConvEden | returns true if electron density is converged
|
| conv_fail.c | ConvFail | handle conergece failure
|
| conv_init_solution.c | ConvInitSolution | drive search for initial temperature, for illuminated face
|
| conv_ioniz.c | ConvIoniz | called by ConvEdenIonz, it calls ConvBase until converged
|
| conv_itercheck.c | ConvIterCheck | check whether model has converged or whether more iterations are needed - implements the iter to converg comnd
|
| conv_pres_temp_eden_ioniz.c | ConvFail | handle conergece failure
|
| conv_pres_temp_eden_ioniz.c | ConvPresTempEdenIoniz | solve for current pressure, calls PressureChange, ConvTempEdenIonize, called by cloudy
|
| conv_temp_eden_ioniz.c | ConvTempEdenIoniz | determine temperature, called by ConPresTempEdenIoniz, calls ConvEdenIoniz to get electron density and ionization
|
| conv_temp_eden_ioniz.c | CoolHeatError | evaluate ionization, and difference in heating and cooling, for temperature temp
|
| conv_temp_eden_ioniz.c | lgConvTemp | returns true if heating-cooling is converged
|
| conv_temp_eden_ioniz.c | MakeDeriv | derive numerical derivative of heating minus cooling
|
| conv_temp_eden_ioniz.c | PutHetCol | save heating, cooling, and temperature in stack for numerical derivatives
|
| cool_alum.c | CoolAlum | compute aluminum cooling
|
| cool_argo.c | CoolArgo | compute argon cooling
|
| cool_calc.c | CoolCalc | compute calcium cooling
|
| cool_carb.c | CoolCarb | evaluate total cooling due to carbon
|
| cool_chlo.c | CoolChlo | compute chlorine cooling
|
| cool_chro.c | CoolChro | compute chromium cooling
|
| cool_coba.c | CoolCoba | compute cobalt cooling
|
| cool_dima.c | ColStrGBar | generate g-bar collision strengths for level 2 line2
|
| cool_dima.c | CoolDima | compute cooling due to level 2 lines
|
| cool_etc.c | CoolAdd | add coolants to the cooling stack, called in evaluation of cooling function
|
| cool_etc.c | CoolSum | total cooling from all entries into cooling stack
|
| cool_etc.c | CoolZero | set cooling and heating stack to zero
|
| cool_eval.c | CoolEvaluate | main routine to call others, to evaluate total cooling
|
| cool_fluo.c | CoolFluo | evaluate total cooling due to fluorine
|
| cool_iron.c | CoolIron | compute iron cooling
|
| cool_iron.c | Fe11Lev5 | compute populations and cooling due to 5 level Fe 11 ion
|
| cool_iron.c | Fe13Lev5 | compute populations and cooling due to 5 level Fe 13 ion
|
| cool_iron.c | fe14cs | compute collision strengths for forbidden transitions
|
| cool_iron.c | Fe2_cooling | compute cooling due to FeII emission
|
| cool_iron.c | Fe3Lev14 | compute populations and cooling due to 14 level Fe III ion
|
| cool_iron.c | Fe4Lev12 | compute populations and cooling due to 12 level Fe IV ion
|
| cool_iron.c | Fe7Lev8 | compute populations and cooling due to 8 level Fe VII ion
|
| cool_iron.c | Fe_10_11_13_cs | evaluate collision stength for Fe
|
| cool_magn.c | CoolMagn | compute magnesium cooling
|
| cool_mang.c | CoolMang | compute manganese cooling
|
| cool_neon.c | CoolNeon | evaluate total cooling due to neon
|
| cool_nick.c | CoolNick | compute nickel cooling
|
| cool_nitr.c | CoolNitr | evaluate total cooling due to nitrogen
|
| cool_oxyg.c | CoolOxyg | evaluate total cooling due to oxygen
|
| cool_phos.c | CoolPhos | compute phosphorus cooling
|
| cool_pota.c | CoolPota | compute potassium cooling
|
| cool_pr.c | coolpr | stores coolants before block printed, when printing cooling agents
|
| cool_punch.c | CoolPunch | punch coolants
|
| cool_scan.c | CoolScan | compute scandium cooling
|
| cool_sili.c | CoolSili | compute silicon cooling
|
| cool_sodi.c | CoolSodi | compute sodium cooling
|
| cool_sulf.c | CoolSulf | compute sulphur cooling
|
| cool_sulf.c | S2cs | compute [CoolHeavy] collision strengths compute collision strengths for [SII] transitions w/in S II ground term. From >>refer s2 cs Ramsbottom, C.A., Bell, K.L., Stafford, R.P. 1996, At. Data Nucl. Data Tables, 63, 57
|
| cool_tita.c | CoolTita | compute titanium cooling
|
| cool_vana.c | CoolVana | compute vanadium cooling
|
| cool_zinc.c | CoolZinc | compute zinc cooling
|
| dynamics.c | DynaCreateArrays | allocate some space needed to save the dynamics structure variables, called from DynaCreateArrays
|
| dynamics.c | DynaEndIter | called at end of iteration when advection is turned on
|
| dynamics.c | DynaEndZone | called at end of zone calculation when advection is turned on
|
| dynamics.c | DynaIonize | called from ionize to evaluate advective terms for current conditions
|
| dynamics.c | DynaPresChngFactor | called from PressureChange to evaluate new density needed for current conditions and wind solution, returns ratio of new to old density
|
| dynamics.c | DynaPrtZone | - called to print zone results
|
| dynamics.c | DynaPunch | punch output for dynamics solutions
|
| dynamics.c | DynaPunch | punch info related to advection
|
| dynamics.c | DynaStartZone | called at start of zone calculation when advection is turned on
|
| dynamics.c | DynaZero | zero some dynamics variables, called from zero.c
|
| fabden.c | fabden | called by dlaw command, returns density for any density law
|
| grains.c | grain | main routine to converge grains thermal solution
|
| grains_qheat.c | GrainMakeDiffuse | main routine for generating the grain diffuse emission, called by RT_diffuse
|
| heat_punch.c | HeatPunch | punch contributors to local heating, with punch heat command, called by punch_do
|
| heat_sum.c | HeatSum | evaluate heating and secondary ionization for current conditions
|
| heat_sum.c | HeatZero | is called by ConvBase
|
| helike.c | AGN_He1_CS | routine to punch table needed for AGN3 - collision strengths of HeI
|
| helike.c | ContinuumLowering | - limit max prin. quan. no. due to continuum lowering processes
|
| helike.c | defect | - calculate quantum defect.
|
| helike.c | HeCreate | create he-like series, called by ContCreatePointers
|
| helike.c | he_assign | - assigns quantum numbers and indices to iso.quant_desig and QuantumNumbers2Index, respectively
|
| helike.c | he_energy | - calculates energy of a given level.
|
| helike.c | printstuff | - in helike.h, printflag determines what will be printed.
|
| helike.c | prt_He_like_DeparCoef | routine to print departure coefficients for he-like species
|
| helike.c | prt_He_like_Pops | routine to print level populations for he-like species
|
| helike_cs.c | AtomCSInterp | do the atom
|
| helike_cs.c | CS_l_mixing_PS64 | - find rate for l-mixing collisions by protons, for neutrals
|
| helike_cs.c | HeCollid | evaluate collisional rates
|
| helike_cs.c | HeCSInterp | interpolate on He1 collision strengths
|
| helike_cs.c | IonCSInterp | do the ions
|
| helike_einsta.c | AngerJ | - used by scqdri
|
| helike_einsta.c | DoFSMixing | - applies a fine structure mixing approximation to A's. To be replaced by method that treats the entire rate matrix.
|
| helike_einsta.c | ForbiddenAuls | calculates transition probabilities for forbidden transitions.
|
| helike_einsta.c | he_1trans | compute Aul for given line
|
| helike_einsta.c | Jint | - used by scqdri
|
| helike_einsta.c | ritoa | - converts the square of the radial integral for a transition (calculated by scqdri) to the transition probability, Aul.
|
| helike_einsta.c | scqdri | - stands for Semi-Classical Quantum Defect Radial Integral
|
| helike_level.c | HeLikeError | fills uncertainty arrays
|
| helike_level.c | HeLikeLevel | level populations
|
| helike_recom.c | cross_section | - calculates the photoionization cross_section for a given level and photon energy
|
| helike_recom.c | HelikeCheckRecomb | - called by SanityCheck to confirm that recombination coef are ok, return value is relative error between new calculation of recom, and interp value
|
| helike_recom.c | HeRecom | - do recomb coef for He, called by HeLike
|
| helike_recom.c | He_cross_section | returns cross section (cm^-2), given EgammaRyd, the photon energy in Ryd, ipLevel, the index of the level, 0 is ground, 3 within 2 3P, nelem is charge, equal to 1 for Helium this is a wrapper for cross_section
|
| helike_recom.c | He_RRCoef_Te | evaluated radiative recombination coef at some temperature
|
| helike_recom.c | radrecomb | - calculates radiative recombination coefficients.
|
| helike_recom.c | Recomb_Seaton59 | - find recombination for given n,using Seaton 59 approximation. The following three are needed by Recomb_Seaton59: ExponentialInt X1Int X2Int
|
| helike_recom.c | RecomInt | - Integral in milne relation. Called by qg32.
|
| highen.c | highen | do high energy radiation field - gas interaction, Compton scattering, etc
|
| hydrobranch.c | HydroBranch | compute branching ratios for Jason Ferguson's model hydrogen atom
|
| hydrocollid.c | C6cs123 | line collision rates for lower levels of hydrogenic carbon, n=1,2,3
|
| hydrocollid.c | Ca20cs123 | line collision rates for lower levels of hydrogenic calcium, n=1,2,3
|
| hydrocollid.c | Fe26cs123 | line collision rates for lower levels of hydrogenic iron, n=1,2,3
|
| hydrocollid.c | H1cs123 | hydrogen collision data levels involving 1s,2s,2p,3.
|
| hydrocollid.c | HCSAR_interp | interpolate on collision strengths
|
| hydrocollid.c | He2cs123 | line collision strengths for lower levels of helium ion, n=1,2,3, by K Korista
|
| hydrocollid.c | Hydcs123 | Hydrogenic de-excitation collision rates n=1,2,3
|
| hydrocollid.c | HydroCollid | evaluate collision rate for model hydrogen atom
|
| hydrocollid.c | Ne10cs123 | line collision rates for lower levels of hydrogenic neon, n=1,2,3
|
| hydroeinsta.c | HydroEinstA | calculates Einstein A's from osillator strengths
|
| hydrogenic.c | Hydrogenic | main routine to call HydroLevel and determine model hydrogen atom level balance
|
| hydrogenic.c | HydroRenorm | - renormalize H so that it agrees with the chemistry
|
| hydrolevel.c | HydroLevel | calls HydroLevelPop or HydroT2Low to solve for ionization balance and level populations of model hydrogen atom
|
| hydrolevel.c | PrtHydroTrace1 | print trace info for hydrogen-like species
|
| hydrolevelpop.c | HydroLevelPop | solve for ionization balance level populations of model hydrogen atom
|
| hydrooscilstr.c | HydroOscilStr | computes hydrogenic oscillator strengths, used in the function hdexct.
|
| hydroreccool.c | HydroRecCool | hydrogen recombination cooling, called by iso_cool
|
| hydrorecom.c | HydroRecom | photoionization, recombination, radiative rates for model hydrogen atom
|
| hydrot2low.c | HydroT2Low | called to do hydrogenic level populations when temp too low for matrix, forces total of level populations to add up to iso.xIonSimple[ipH_LIKE][nelem], so results of this routine will always agree with that value
|
| hydro_bauman.c | In this version, quantites that would normal cause a 64-bit floating point processor
|
| hydro_bauman.c | ( or is it precision ). We use LOG_10 for convenience.
|
| hydro_bauman.c | hv | calculates photon energy in ergs for n -> n' transitions for H and H-like ions
|
| hydro_bauman.c | H_Einstein_A_lin | calculates Einstein A for any nlz
|
| hydro_bauman.c | H_photo_cs_lin | returns hydrogenic photoionization cross section in cm-2
|
| hydro_bauman.c | other | version begins to fail. The trade-off is, of course, lower accuracy
|
| hydro_bauman.c | This | allows us to use an upper principle quantum number `n' greater than which the
|
| hydro_bauman.c | to | either underflow or overflow are evaluated using logs instead of floating point math.
|
| hydro_vs_rates.c | Hion_colldeexc_cs | collision strength for collisional de-excitation for any levels of hydrogenic Z
|
| hydro_vs_rates.c | Hion_coll_ioniz_ratecoef | calculate hydrogenic ionization rates for ions with all n, and Z
|
| hydro_vs_rates.c | hydro_vs_deexcit | compute collision strength for collisional deexcitation for hydrogen atom, from >>refer H1 collision Vriens, L., & Smeets, A.H.M. 1980, Phys Rev A 22, 940 hydro_vs_ioniz generate hydrogenic collisional ionization rate coefficients for quantum number n
|
| hypho.c | hypho | - create hydrogenic photoionization cross sections
|
| input_init.c | input_init | initial input_readarray array for storing line images at start of calculation line image is up and low case
|
| ion_alumi.c | IonAlumi | ionization balance for aluminum
|
| ion_argon.c | IonArgon | compute ionization balance of argon
|
| ion_beryl.c | IonBeryl | ionization balance for beryllium
|
| ion_boron.c | IonBoron | ionization balance for boron
|
| ion_calci.c | IonCalci | perform ionization balance for calcium
|
| ion_carbo.c | IonCarbo | compute ionization balance for carbon
|
| ion_chlor.c | IonChlor | ionization balance for chlorine
|
| ion_chrom.c | IonChrom | do ionization balance for chromium
|
| ion_cobal.c | IonCobal | do ionization balance for cobalt
|
| ion_collis.c | ion_collis | fill in collisional ionization rates, and resulting cooling
|
| ion_coppe.c | IonCoppe | do ionization balance for copper The testing can be commented out
|
| ion_DR_Badnell.c | init < 0 or init >302 or final < 0 or final > 302
|
| ion_DR_Badnell.c | '-1': the transition is not defined
|
| ion_DR_Badnell.c | '-2': initial <= final
|
| ion_DR_Badnell.c | '99': unknown invalid entries
|
| ion_DR_Badnell.c | It returns
|
| ion_fluor.c | IonFluor | compute ionization balance for fluorine
|
| ion_helium.c | IonHelium | solve ionization balance for helium
|
| ion_iron.c | IonIron | ionization balance for iron
|
| ion_lithi.c | IonLithi | compute ionization balance for lithium
|
| ion_magne.c | IonMagne | ionization balance for magnesium
|
| ion_manga.c | IonManga | derive ionization balance for manganese
|
| ion_neon.c | IonNeon | ionization balance for neon
|
| ion_nicke.c | IonNicke | ionization balance for nickel
|
| ion_nitro.c | IonNitro | ionization balance for nitrogen
|
| ion_oxyge.c | IonOxyge | derive ionization balance for oxygen
|
| ion_phosi.c | IonPhosi | derive ionization balance for phosphorus
|
| ion_photo.c | ion_photo | fill array PhotoRate with photoionization rates for heavy elements
|
| ion_potas.c | IonPotas | compute ionization equilibrium for Potassium
|
| ion_recomb.c | ion_recomb | generate recombination coefficients for any species
|
| ion_recomb.c | ion_recombAGN | generate recombination coefficients for AGN table
|
| ion_recomb.c | lint | -e817 pclint generates tons of bogus nelem < 0 warnings
|
| ion_scand.c | IonScand | do ionization balance for scandium
|
| ion_silic.c | IonSilic | determine ionization balance of Silicon
|
| ion_sodiu.c | IonSodiu | ionization balance for sodium
|
| ion_solver.c | ion_solver | solve the bi-diagonal matrix for ionization balance
|
| ion_sulph.c | IonSulph | compute ionization balance for sulphur
|
| ion_titan.c | IonTitan | determine ionization balance for titanium
|
| ion_trim.c | ion_trim | raise or lower most extreme stages of ionization considered, called by ConvBase - ion limits were originally set by
|
| ion_vanad.c | IonVanad | do ionization balance for vanadium
|
| ion_zero.c | ion_zero | zero out heating save arrays
|
| ion_zinc.c | IonZinc | ionization balance for zinc
|
| iso_cool.c | iso_cool | compute net cooling due to hydrogenc atom species, ground state photoionization of hydrogenic species done in sumheat
|
| iso_create.c | iso_create | create data for hydrogen and helium, 1 per coreload, called by ContCreatePointers in turn called after commands parsed
|
| iso_create.c | iso_zero | zero data for hydrogen and helium
|
| iso_ionize_recombine.c | ChargeTransferUpdate | update rate of ct ionization and recombination for H atoms
|
| iso_ionize_recombine.c | iso_ionize_recombine | find state specific creation and destruction rates for iso sequences
|
| iso_photo.c | iso_photo | do photoionization rates for element nelem on the ipISO isoelectronic sequence
|
| iter_end_chk.c | iter_end_check | after each zone by Cloudy, determines whether model is complete
|
| iter_startend.c | IterRestart | restart iteration
|
| iter_startend.c | IterStart | set and save values of many variables at start of iteration
|
| lines_service.c | abscf | convert gf into absorption coefficient
|
| lines_service.c | chIonLbl | use information in line array to generate a null terminated ion label in "Fe 2"
|
| lines_service.c | chLineLbl | use information in line transfer arrays to generate a line label
|
| lines_service.c | DumpLine | print various information about an emission line vector, used in debugging, print to std out, ioQQQ
|
| lines_service.c | eina | convert a gf into an Einstein A
|
| lines_service.c | emit_frac | returns fraction of populations the produce emission
|
| lines_service.c | EmLineJunk | set all elements of EmLine struc to dangerous values
|
| lines_service.c | EmLineZero | set all elements of EmLine struc to zero
|
| lines_service.c | FndLineHt | search through line heat arrays to find the strongest heat source
|
| lines_service.c | gbar0 | compute g-bar gaunt factor for neutrals
|
| lines_service.c | gbar1 | compute g-bar collision strength using Mewe approximations
|
| lines_service.c | GetGF | convert Einstein A into oscillator strength
|
| lines_service.c | HLineTransOpacSetdefine | current transition probabilities and opacities for H lines
|
| lines_service.c | lgTauGood | returns true is we have not overrun optical depth scale
|
| lines_service.c | linadd | enter lines into the line storage array, called once per zone
|
| lines_service.c | lindst | add local line intensity to line luminosity stack
|
| lines_service.c | LineConvRate2CS | convert down coll rate back into electron cs in case other parts of code need this for reference
|
| lines_service.c | MakeCS | compute collision strength by g-bar approximations
|
| lines_service.c | OccupationNumberLine | - derive the photon occupation number at line center for any line
|
| lines_service.c | outline | - adds line photons to reflin and outlin
|
| lines_service.c | PntForLine | generate pointer for forbidden line
|
| lines_service.c | PutCS | enter a collision strength into an individual line vector
|
| lines_service.c | PutExtra | enter and 'extra' intensity source for some line
|
| lines_service.c | PutLine | enter local line intensity into the intensity stack for eventual printout
|
| lines_service.c | RefIndex | calculates the index of refraction of air using the line energy in wavenumbers, used to convert vacuum wavelengths to air wavelengths.
|
| lines_service.c | TexcLine | derive excitation temperature of line from contents of line array
|
| lines_service.c | totlin | sum total intensity of cooling, recombination, or intensity lines
|
| lines_service.c | WavlenErrorGet | - find difference between two wavelengths
|
| magnetic.c | Magnetic_evaluate | evaluate some parameters to do with magnetic field
|
| magnetic.c | Magnetic_init | initialize magnetic field parameters
|
| magnetic.c | Magnetic_reinit | - reinitialized magnetic field at start of new iteration
|
| magnetic.c | ParseMagnet | parse magnetic field command
|
| maincl.c | main | program that reads input and calls cloudy to compute a single model, or try to optimize an observed model. Routine returns 0 if model is ok, and 1 if problems occurred.
|
| map.c | map_do | produce map of heating-cooling space for specified zone, called as result of map command
|
| math_complex.c | cmabs | dp complex absolute value
|
| math_complex.c | cmadd | retn the sum of two dp complex nos.
|
| math_complex.c | cmdiv | retn the quotient of two dp complex nos.
|
| math_complex.c | cmexp | dp complex exponential
|
| math_complex.c | cmmul | retn the product of two dp complex nos.
|
| math_complex.c | cmneg | dp complex unary minus operation
|
| math_complex.c | cmsub | retn the difference of two dp complex nos.
|
| math_complex.c | ftocm | convert floats to dp complex
|
| mean.c | aver | compute average of various quantities over the computed geometry called by startenditer to initialize, radinc to increment, and prtfinal for final results
|
| mean.c | MeanInc | increment mean ionization fractions and temperatures over computed structure, in radius_increment
|
| mean.c | MeanIonRadius | do radius mean ionization fractions or temperature over radius for any element
|
| mean.c | MeanIonVolume | do volume mean ionization fractions or temperature over volume for any element
|
| mean.c | MeanZero | zero mean of ionization fractions array
|
| molcol.c | molcol | generate and print molecular column densities
|
| mole_co_atom.c | cdCO_colden | return column density in H2, negative -1 if cannot find state, header is cddrive
|
| mole_co_atom.c | CO_PopsEmisCool | evaluate rotation levels populations, emission, and cooling
|
| mole_co_drive.c | CO_drive | - public routine, calls CO_solve to converge molecules
|
| mole_co_drive.c | lgMolecAver | average old and new molecular equilibrium balance from CO_solve
|
| mole_co_ele_recomb.c | CO_ele_recomb() contains all heavy element reactions with electrons
|
| mole_co_etc.c | CO_Init | called from cdInit to initialized co routines
|
| mole_co_etc.c | CO_update_chem_rates | update rate coefficients, only temp part - in mole_co_etc.c
|
| mole_co_gas_grain.c | CO_gasgrain | defines matrix elements for gas-grain chemistry of heavy element molecules
|
| mole_co_hyd_he.c | CO_step | fills in matrix for heavy elements molecular routines
|
| mole_co_monox.c | CO_step | fills in matrix for heavy elements molecular routines
|
| mole_co_photo.c | CO_photo | fills in matrix elements for heavy element photon and cosmic ray processes
|
| mole_co_rates.c | CO_rates | calculates all the rates for coupled reactions in the heavy element network.
|
| mole_co_solve.c | CO_step | fills in matrix for heavy elements molecular routines
|
| mole_co_step.c | CO_step | fills in matrix for heavy elements molecular routines
|
| mole_h2.c | cdH2_colden | return column density in H2, negative -1 if cannot find state, header is cddrive
|
| mole_h2.c | H2_Accel | radiative acceleration due to H2
|
| mole_h2.c | H2_Colden | maintain H2 column densities within X
|
| mole_h2.c | H2_collid_rates | - set H2 collision rates
|
| mole_h2.c | H2_ContPoint | set the ipCont struc element for the H2 molecule, called by ContCreatePointers
|
| mole_h2.c | H2_cooling | evaluate cooling and heating due to H2 molecule
|
| mole_h2.c | H2_DR | choose next zone thickness based on H2 big molecule
|
| mole_h2.c | H2_InterEnergy | internal energy of H2 called in PresTotCurrent
|
| mole_h2.c | H2_itrzn | - average number of H2 pop evaluations per zone
|
| mole_h2.c | H2_LevelPops | do level H2_populations for H2, called by Hydrogenic
|
| mole_h2.c | H2_Level_low_matrix | evaluate CO rotation cooling
|
| mole_h2.c | H2_LineZero | initialize optical depths in H2, called from RT_tau_init
|
| mole_h2.c | H2_RadPress | rad pre due to h2 lines called in PresTotCurrent
|
| mole_h2.c | H2_RTMake | do RT for H2 - called from RT_line_all
|
| mole_h2.c | H2_RT_diffuse | do emission from H2 - called from RT_diffuse
|
| mole_h2.c | H2_RT_tau_inc | increment optical depth for the H2 molecule, called from RT_tau_inc
|
| mole_h2.c | H2_RT_tau_reset | the large H2 molecule, called from RT_tau_reset
|
| mole_h2.c | H2_X_coll_rate_evaluate | find collisional rates within X
|
| mole_h2.c | turn | this flag on to do minimal debug print of pops
|
| mole_h2_create.c | H2_Create | create variables for the H2 molecule, called by ContCreatePointers after continuum mesh has been set up
|
| mole_h2_etc.c | H2_gs_rates | evaluate rates between ground and star states of H2 for use in chemistry
|
| mole_h2_etc.c | H2_init | - called to initialize things from cdInit
|
| mole_h2_etc.c | H2_Solomon_rate | find rates between H2s and H2g and other levels, for eventual use in the chemistry
|
| mole_h2_etc.c | H2_Zero | zero out vars in the large H2 molecule, called from zero before any commands are parsed
|
| mole_h2_etc.c | H2_zero_pops_too_low | - zero out some H2 variables if we decide not to compute the full sim, called by H2_LevelPops
|
| mole_h2_etc.c | mole_H2_LTE | sets Boltzmann factors and LTE unit population of large H2 molecular
|
| mole_h2_form.c | mole_H2_form | find state specific rates grains and H- form H2
|
| mole_h2_io.c | cdH2_Line returns 1 if we found the line, or FALSE==0 if we did not find the line because ohoto-para transition or upper level has lower energy than lower level
|
| mole_h2_io.c | chMolBranch | returns a char with the spectroscopic branch of a transition
|
| mole_h2_io.c | H2_LinesAdd | add in explicit lines from the large H2 molecule, called by lines_molecules
|
| mole_h2_io.c | H2_ParsePunch | parse the punch h2 command
|
| mole_h2_io.c | H2_ParsePunch | parse the punch h2 command
|
| mole_h2_io.c | H2_Prt_column_density | print H2 info into zone results, called from prtzone for each printed zone
|
| mole_h2_io.c | H2_Prt_line_tau | print line optical depths, called from premet in response to print line optical depths command
|
| mole_h2_io.c | H2_Prt_Zone | print H2 info into zone results, called from prtzone for each printed zone
|
| mole_h2_io.c | H2_PunchDo | punch some properties of the large H2 molecule
|
| mole_h2_io.c | H2_PunchLineStuff | include H2 lines in punched optical depths, etc, called from PunchLineStuff
|
| mole_h2_io.c | H2_Punch_line_data | punch line data for H2 molecule
|
| mole_h2_io.c | H2_ReadCollRates | read collision rates
|
| mole_h2_io.c | H2_ReadDissprob | read dissociation probabilities and kinetic energies for all electronic levels
|
| mole_h2_io.c | H2_ReadEnergies | read energies for all electronic levels
|
| mole_h2_io.c | H2_ReadTransprob | read transition probabilities
|
| mole_h2_io.c | H2_Read_hminus_distribution | read distribution function for H2 population following formation from H minus
|
| mole_h_drive.c | hmole | determine populations of hydrogen molecules
|
| mole_h_drive.c | hmole_init | - initialize some hmole vars
|
| mole_h_drive.c | hmole_old | determine populations of hydrogen molecules
|
| mole_h_drive.c | hmole_reactions | update hmole reactions
|
| mole_h_step.c | >> chng 02 nov 7 rjrw, Mole Moreliano: changes to linearized iterative form
|
| mole_h_step.c | about | generating the in and out vectors from a text string, e.g. "H +
|
| mole_h_step.c | and | next to switch on the prints in the matrix assembly which apply to
|
| mole_h_step.c | from | Robin Williams:
|
| mole_h_step.c | H | => H2" ;-), but you'd have to verify uniqueness).
|
| mole_h_step.c | hmirat | compute radiative association rate for H-
|
| mole_h_step.c | hmole_step | do a step in chemical network
|
| mole_h_step.c | kind | of naming scheme for the reactions may come in handy (I'd thought
|
| mole_h_step.c | lint | -e778 const express eval to 0
|
| mole_h_step.c | of | a pain grepping down to find the 47th reaction, so I guess some
|
| mole_h_step.c | switch | printsol on to check which terms in the chemical matrix change,
|
| mole_h_step.c | The | process for these kind of problems seems to be pretty uniform:
|
| mole_h_step.c | the | species involved to find what reactions are involved. It's a bit
|
| opacity_add1element.c | OpacityAdd1Element | enter total photo cross section for all subshells into opacity array
|
| opacity_add1subshell.c | OpacityAdd1Subshell | add opacity due to single shell to main opacity array
|
| opacity_add1subshell.c | OpacityAdd1SubshellInduc | add opacity of individual species, including stimulated emission
|
| opacity_addtotal.c | OpacityAddTotal | derive total opacity for this position, called by ConvBase
|
| opacity_createall.c | hmiopc | derive total H- H minus opacity
|
| opacity_createall.c | OpacityCreate1Element | generate ionic subshell opacities by calling atmdat_phfit
|
| opacity_createall.c | OpacityCreateAll | compute initial set of opacities for all species
|
| opacity_createall.c | OpacityValenceRescale | routine to rescale non-OP valence shell cross sections
|
| opacity_createall.c | Opacity_iso_photo_cs | returns photoionization cross section for isoelectronic sequences
|
| opacity_createall.c | opacity_more_memory | allocate more memory for opacity stack
|
| opacity_createall.c | rayleh | compute Rayleigh scattering cross section for Lya
|
| opacity_createall.c | Yan_H2_CS | - cross sections for the photoionization of H2 NB NB NB NB NB NB NB NB NB NB NB NB NB NB everything set here must be written to the opacity store files
|
| opacity_zero.c | OpacityZero | zero out opacity save arrays, save old opacity in OldOpacSave array
|
| optimize_amoeba.c | optimize_amoeba | routine for optimizing model parameters
|
| optimize_do.c | optimize_do | main driver for optimization runs
|
| optimize_func.c | optimize_func | actual function called during evaluation of optimization run
|
| optimize_phymir.c | optimize_phymir | Peter van Hoof's optimization routine
|
| optimize_powell.c | optimize_powell | - spectrum minimization routine - logic closely based on routine in Press et al, but totally recoded to be redistributable
|
| parse_absmag.c | ParseAbsMag | parse the absolute magnitude command
|
| parse_abundances.c | ParseAbundances | parse and read in composition as set by abundances command
|
| parse_age.c | ParseAge | parse parameters off the age command
|
| parse_agn.c | ParseAgn | parse parameters for the AGN continuum shape command
|
| parse_atomco.c | ParseAtomCO | parse information from the rotor command line
|
| parse_atomh2.c | ParseAtomH2 | parse information from the atom command line
|
| parse_atomhelike.c | ParseAtomHeLike | parse parameters off the helium command
|
| parse_atomhlike.c | ParseAtomHLike | parse information from the atom h-like command line
|
| parse_backgrd.c | ParseBackgrd | parse options for the BACKGROUND command - this actually enters two continua
|
| parse_blackbody.c | ParseBlackbody | parse parameters off black body command
|
| parse_CMB.c | ParseCMB | parse parameters from fireball command
|
| parse_commands.c | ParseCommands | main command line parser, decode command, then call other routines to read
|
| parse_compile.c | ParseCompile | compile werner or kurucz model atmospheres into cloudy format, originallly by K Volk, also compile opacity and grains
|
| parse_constant.c | ParseConstant | parse parameters from the 'constant ...' command
|
| parse_coronal.c | ParseCoronal | parse parameters off coronal equilibrium command
|
| parse_cosmic_rays.c | ParseCosmicRays | parse the cosmic rays command
|
| parse_crashdo.c | ParseCrashDo | any of several tests to check that the code can crash
|
| parse_dlaw.c | ParseDLaw | parse parameters on the dlaw command
|
| parse_dont.c | ParseDont | parse the dont command - do not do something
|
| parse_drivecmnd.c | dgaunt | drive gaunt factor routines by letting user query values
|
| parse_drivecmnd.c | DrvCaseBHS | allow user to query hydrogen A's, asks for up, low level, gives A, drive hyas
|
| parse_drivecmnd.c | DrvHyas | allow user to query hydrogen A's, asks for up, low level, gives A, drive hyas
|
| parse_drivecmnd.c | ParseDriveCmnd | parse the drive command - drive calls to various subs
|
| parse_element.c | ParseElement | parse options on element command
|
| parse_fluc.c | ParseFluc | parse the fluctuations command, which affects either density or abundances
|
| parse_f_nu.c | ParseF_nu | parse intensity command parameters
|
| parse_globule.c | ParseGlobule | parse parameters off the globule command
|
| parse_grain.c | ParseGrain | parse parameters on grains command
|
| parse_hden.c | ParseHDEN | parse the hden command
|
| parse_init.c | ParseInit | bring an initialization file into input stream before parse
|
| parse_interp.c | ParseInterp | parse parameters on interpolate command
|
| parse_ionpar.c | ParseIonPar | parse the ionization parameter command
|
| parse_map.c | ParseMap | parse map command to produce map of heating and cooling, map is produced by calling punt(" map")
|
| parse_metal.c | ParseMetal | parse parameters on metal command
|
| parse_norm.c | ParseNorm | parse parameters on the normalize command
|
| parse_optimize.c | GetOptColDen | read observed column densities & errors for optimizer
|
| parse_optimize.c | GetOptLineInt | parse observed line intensites for optimization routines
|
| parse_optimize.c | GetOptTemp | read observed temperatures & errors for optimizer
|
| parse_optimize.c | ParseOptimize | parse the optimize command line
|
| parse_plot.c | ParsePlot | parse the plot command
|
| parse_plot.c | ParsePlotRangeOption | parse range from plot command
|
| parse_powerlawcontinuum.c | ParsePowerlawContinuum | parse the power law continuum command
|
| parse_print.c | ParsePrint | parse the print command
|
| parse_print.c | prt_constants | print physical constants
|
| parse_punch.c | ChkUnits | check for keyword UNITS on line, then scan wavelength or energy units if present
|
| parse_punch.c | ClosePunchFiles | close all punch files
|
| parse_punch.c | ParsePunch | parse the punch command
|
| parse_punch.c | PunchFilesInit | initialize punch file pointers, called from cdInit
|
| parse_radius.c | ParseRadius | parse the radius command
|
| parse_rangeoption.c | ParseRangeOption | parse the range option on the luminosity command
|
| parse_ratio.c | ParseRatio | derive continuum luminosity of this continuum relative to previous
|
| parse_set.c | ParseSet | scan parameters off SET command
|
| parse_sphere.c | ParseSphere | parse parameters on sphere command
|
| parse_stop.c | ParseStop | parse the stop command
|
| parse_table.c | lines_table | envoked by table lines command, check if we can find all lines in a given list
|
| parse_table.c | ParseTable | parse the table read command
|
| parse_table.c | read_hm05 | read in the data files and interpolate the continuum to the correct redshift
|
| parse_tlaw.c | ParseTLaw | parse parameters on the tlaw command to set temperature as function of depth, currently only does Bertoldi & Draine simple T law
|
| parse_trace.c | ParseTrace | read in options off the trace command line
|
| plot.c | plot | master routine to generate some sort of plot
|
| pressure_change.c | lgConvPres | finds amount by which density should change to move towards pressure equilibrium returns true if pressure is converged
|
| pressure_change.c | PressureChange | called by ConvPresTempEdenIoniz evaluate the current pressure, change needed to get it to converge, the global static variable pressure_change_factor aplies this correction factor to all gas constituents, sets conv.lgConvPres true if good pressure, false if pressure change capped
|
| pressure_total.c | PresTotCurrent | determine the gas and line radiation pressures for current conditions, this sets values of pressure.PresTotlCurr, also calls tfidle
|
| prt.c | prt_LineLabels | punch all labels and wavelengths for emission line array
|
| prt.c | prt_wl | - print floating wavelength in Angstroms, in output format
|
| prt.c | sprt_wl | write wavelength to string - must be kept parallel with prt_wl
|
| prt_alltau.c | PrtAllTau | master routine controlling printout of optical depths at end of calculation
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| prt_columns.c | PrtColumns | print column densities of all elements
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| prt_comment.c | badprt | print out coolants if energy not conserved
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| prt_comment.c | chkCaHeps | check whether CaII K and H epsilon overlap
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| prt_comment.c | outsum | sum outward continuum beams
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| prt_comment.c | PrtComment | analyze model, generating comments on its features
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| prt_comment.c | prt_smooth_predictions | check whether fluctuations in any predicted quantities occurred
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| prt_continuum.c | PrtContinuum | print information about continuum if requested with PRINT CONTINUUM command, called by PrtFinal
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| prt_final.c | gett2 | analyze computed structure to get structural t^2
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| prt_final.c | gett2o3 | analyze computed [OIII] spectrum to get t^2
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| prt_final.c | PrtFinal | create PrtFinal pages of printout, emission line intensities, etc
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| prt_final.c | StuffComment | routine to stuff comments into the stack of comments, def in lines.h
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| prt_header.c | PrtHeader | print program's header, including luminosities and ionization parameters
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| prt_linepres.c | PrtLinePres | print line radiation pressures for current conditions
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| prt_lines.c | Drive_cdLine | do the drive cdLine command
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| prt_lines.c | lines | main routine to put emission line intensities into line stack, calls lineset1, 2, 3, 4
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| prt_linesum.c | PrtLineSum | parse print line sum command to enter set of lines into sum
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| prt_lines_continuum.c | lines_continuum | put energetics, H, and He lines into line intensity stack
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| prt_lines_general.c | GetMaxhLine | find the strongest heating line
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| prt_lines_general.c | lines_general | put general information and energetics into line intensity stack
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| prt_lines_grains.c | lines_hydro | put H-iso seq into line intensity stack
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| prt_lines_helium.c | lines_helium | put energetics, H, and He lines into line intensity stack
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| prt_lines_helium.c | TempInterp | interpolates on a grid of values to produce predicted value at current Te.
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| prt_lines_hydro.c | lines_hydro | put H-iso seq into line intensity stack
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| prt_lines_lv1_k_zn.c | lines_lv1_k_zn | place lines of elements potatium and heavier into lines storage stack
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| prt_lines_lv1_li_ne.c | lines_lv1_li_ne | place lines of elements lithium through neon into lines storage stack n_ion for C, N, or O recombination lines from Dima's list, also zero's line in master stack so not entered second time in later dump of all rec lines
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| prt_lines_lv1_na_ar.c | lines_lv1_na_ar | place lines of elements sodium through argon into lines storage stack
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| prt_lines_molecules.c | lines_molecules | put energetics, H, and He lines into line intensity stack
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| prt_meanion.c | PrtMeanIon | print mean ionization fractions or temperatures for all elements
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| prt_met.c | prtmet | print all line optical depths at end of iteration
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| prt_zone.c | PrtZone | print out individual zone results
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| prt_zone.c | prt_H_like_DeparCoef | print out hydrogenic populations
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| prt_zone.c | prt_H_like_Pops | print out hydrogenic populations
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| punch_do.c | pun1Line | called by PunchLineStuff to produce output for one line
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| punch_do.c | punch | h emiss, for chapt 4, routine is below
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| punch_do.c | PunchDo | produce punch output during calculation, chTime is 'MIDL' during calculation, 'LAST' at the end
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| punch_do.c | PunchGaunts | called by punch gaunts command to output gaunt factors
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| punch_do.c | PunchLineStuff | punch optical depths or source functions for all transferred lines
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| punch_do.c | PunchNewContinuum | produce the 'punch new continuum' output
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| punch_do.c | PunchNewContinuum | produce the 'punch new continuum' output
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| punch_do.c | PunchSpecial | generate output for the punch special command
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| punch_do.c | PunLineIntensity | produce the 'punch lines intensity' output
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| punch_do.c | punResults | punch results from punch results command
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| punch_do.c | PunResults1Line | do single line of output for the punch results and punch line intensity commands
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| punch_do.c | PunResults1Line | do single line of output for the punch results and punch line intensity commands
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| punch_do.c | the | number of emission lines across one line of printout
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| punch_line.c | punch_line | parse punch lines command, or actually do the punch lines output
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| punch_line.c | Punch_Line_RT | parse the punch line rt command - read in a set of lines
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| punch_linedata.c | Punch1LineData | punch data for one line
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| punch_linedata.c | PunchLineData | punches selected line data for all lines transferred in code
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| punch_opacity.c | punch_opacity | punch total opacity in any element, punch opacity command
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| punch_special.c | PunchSpecial | generate output for the punch special command
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| radius_first.c | radius.drad
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| radius_first.c | radius.drad_x_fillfac
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| radius_first.c | radius_first | derive thickness of first zone, called after conditions in first zone are established, sets
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| radius_increment.c | pnegopc | punch negative opacities on io unit, iff 'set negopc' command was given
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| radius_increment.c | radius_increment | do work associated with geometry increments of this zone, called before RT_tau_inc
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| radius_next.c | ContRate | called by radius_next to find energy of maximum continuum-gas interaction
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| radius_next.c | GrainRateDr | called by radius_next to find grain heating rate dr
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| radius_next.c | radius_next | use adaptive logic to find next zone thickness
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| radius_next.c | TODO | 2 - this routine is very important since it sets the pace for the calculation, and directly affects the convergence of the code. Most of the logic is very old and messy. 1) make sure all test cases have punch dr 2) cat all these reasons together into one file and sort on the reason 3) discover what logic is the main pacesetter for the code 4) which are never triggered and so can be removed
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| rt_continuum_shield_fcn.c | conpmp | local continuum pumping rate radiative transfer for all lines
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| rt_continuum_shield_fcn.c | conpmp | local continuum pumping rate radiative transfer for all lines
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| rt_continuum_shield_fcn.c | rt_continuum_shield_fcn | computing continuum shielding due to single line
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| rt_continuum_shield_fcn.c | vfun | voit function helper routine
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| rt_diffuse.c | RT_diffuse | evaluate local diffuse emission for this zone, fill in ConEmitLocal array with diffuse emission, OTS rates for this zone were set in RT_OTS, called by Cloudy, this routine adds energy to the outward beam
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| rt_escprob.c | esca0k2 | derive Hummer's K2 escape probability for Doppler core only
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| rt_escprob.c | esc_CRDcore | escape probability for CRD with no wings
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| rt_escprob.c | esc_CRDwing | escape probability for CRD with wings
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| rt_escprob.c | esc_CRDwing_1side | fundamental escape probability radiative transfer routine, for complete redistribution
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| rt_escprob.c | esc_PRD | escape probability radiative transfer for incomplete redistribution
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| rt_escprob.c | esc_PRD_1side | fundamental escape probability radiative transfer routine for incomplete redistribution
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| rt_escprob.c | RTesc_lya | escape prob for hydrogen atom Lya, using Hummer and Kunasz results, called by hydropesc
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| rt_escprob.c | RT_DestProb | returns line destruction probability due to continuum opacity
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| rt_escprob.c | RT_LineWidth | determine half width of any line with known optical depths
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| rt_line_all.c | RT_line_all | do escape and destruction probs for all lines in code. Called with FALSE arg by ionize, to only redo destruction probabilites, and with TRUE by cloudy to do both escape and destruction
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| rt_line_driving.c | RT_line_driving | derive radiative acceleration due to line absorption of incident continuum
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| rt_line_one.c | RT_line_static | do line radiative transfer for static geometry, evaluates escape and destruction probability, called by HydroPEsc, RT_line_all
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| rt_line_one.c | RT_line_wind | do line radiative transfer for wind geometry
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| rt_line_one_tauinc.c | RT_line_one_tauinc | increment optical depths for all heavy element lines, zone by zone, mainly called by RT_tau_inc, but also by FeII
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| rt_line_one_tau_reset.c | RT_line_one_tau_reset | computes average of old and new optical depths for new scale at end of iter, called by update, also FeIILevelPops
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| rt_ots.c | RT_OTS | compute diffuse fields due to H, He atoms, ion, triplets, metal recombination, called by ConvBase
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| rt_ots.c | RT_OTS_AddCont | add local destruction of continuum to ots field
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| rt_ots.c | RT_OTS_AddLine | add local destruction of lines to ots field
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| rt_ots.c | RT_OTS_ChkSum | sanity check confirms summed continua reflect contents of individuals
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| rt_ots.c | RT_OTS_Update | sum flux, otscon, otslin, ConInterOut, outlin, to form SummeDif, SummedCon SummedOcc
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| rt_ots.c | RT_OTS_Zero | - zero out some vectors - this is only called when code initialized by ContSetIntensity
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| rt_radiative_acceleration.c | RT_radiative_acceleration | radiative acceleration due to incident continuum, calls rt_line_driving for lines
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| rt_recom_effic.c | RT_recom_effic | generate escape probability function for continua,
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| rt_stark.c | RT_stark | compute stark broadening escape probabilities using Puetter formalism
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| rt_tau_inc.c | RT_tau_inc | increment optical depths once per zone, called after radius_increment
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| rt_tau_init.c | RT_tau_init | set initial outward optical depths at start of first iteration, it is only called by cloudy one time per complete calculation, just after continuum set up and before start of convergence attempts. RT_tau_reset after first iteration, updates the optical depths, mirroring this routine but with the previous iteration's variables
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| rt_tau_reset.c | RT_tau_reset | after first iteration, updates the optical depths, mirroring this routine but with the previous iteration's variables
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| sanity_check.c | SanityCheck | check that various parts of the code still work, called by Cloudy after continuum and optical depth arrays are set up, but before initial temperature and ionization
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| service.c | AnuUnit | produce continuum energy in arbitrary units
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| service.c | BadMalloc | announce memory allocation failure - put breakpoint here to find where
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| service.c | BadOpen | general error handler for trying to open file, but failing
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| service.c | BadRead | general error handler for trying to read data, but failing
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| service.c | broken | set flag saying that the code is broken,
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| service.c | cap4 | convert first 4 char of input line chLab into chCAP all in caps, null termination
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| service.c | caps | convert input command line (through eol) to ALL CAPS
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| service.c | cdEXIT | the routine that should be called to exit cloudy
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| service.c | chIonLbl | use information in line array to generate a null terminated ion label in "Fe 2"
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| service.c | CodeReview | - placed next to code that needs to be checked
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| service.c | csphot | returns photoionization cross section from opacity stage using std pointers
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| service.c | dbg_printf | is a debug print routine that was provided by Peter Teuben, as a component from his NEMO package. It offers run-time specification of the level of debugging
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| service.c | dsexp | safe exponential function for doubles
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| service.c | e2 | second exponential integral
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| service.c | FFmtRead | scan input line for free format number
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| service.c | fixit | - say that code needs to be fixed
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| service.c | fudge | enter fudge factors, or some arbitrary number, with fudge command
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| service.c | GetElem | scans line image, finds element. returns atomic number j, on C scale
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| service.c | GetQuote | get any name between double quotes off command line return string as chLabel, is null terminated
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| service.c | insane | set flag saying that insanity has occurred
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| service.c | lgMatch | determine whether match to a keyword occurs on command line, return value is 0 if no match, and position of match within string if hit
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| service.c | MyAssert | a version of assert that fails gracefully
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| service.c | MyCalloc | wrapper for calloc(). Returns a good pointer or dies.
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| service.c | MyGaussRanGauss | a wrapper for RandGauss, see below
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| service.c | MyMalloc | wrapper for malloc(). Returns a good pointer or dies.
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| service.c | NoNumb | general error handler for no numbers on input line
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| service.c | qg32 | 32 point Gaussian quadrature, original fortran given to Gary F by Jim Lattimer
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| service.c | qip | compute pow(x,n) for positive integer n through repeated sqarings
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| service.c | RandGauss | normal random variate generator
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| service.c | sexp | safe exponential function
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| service.c | ShowMe | produce request to send information to GJF after a crash
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| service.c | spsort | netlib routine to sort array returning sorted indices this label is null terminated
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| service.c | TestCode | set flag saying that test code is in place
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| service.c | the | prototypes are in cddefines.h and so are automatically picked up by all routines
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| service.c | TotalInsanity | general error handler for something that cannot happen
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| stars_atlas.c | AtlasCompile | rebin Kurucz stellar models to match energy grid of code
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| stars_atlas.c | AtlasGetOne | get one of the Atlas model atmospheres, coded by K. Volk
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| stars_atlas.c | AtlasInterpolate | interpolate on atlas model atmospheres, by K Volk
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| stars_costar.c | CoStarCompile | rebin costar stellar atmospheres to match cloudy energy grid, called by the compile stars command
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| stars_costar.c | CoStarInterpolate | read in and interpolate on costar grid of windy O atmospheres
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| stars_kurucz79.c | kurucz79 | obtain interpolated Kurucz stellar atmosphere
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| stars_mihals.c | mihals | generate continuum from Mihalas stellar atmosphere
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| stars_rauch02.c | RauchCompile02 | rebin Rauch stellar models to match energy grid of code
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| stars_rauch02.c | RauchInitialize02 | K Volk's routine to compact the 66 Rauch atmospheres into a large ascii file.
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| stars_rauch02.c | RauchInterpolate02 | get one of the Rauch model atmospheres, original version by K. Volk
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| stars_rauch_old.c | RauchCompile | rebin Rauch stellar models to match energy grid of code
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| stars_rauch_old.c | RauchInitialize | K Volk's routine to compact the 66 Rauch atmospheres into a large ascii file.
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| stars_rauch_old.c | RauchInterpolate | get one of the Rauch model atmospheres, original version by K. Volk
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| stars_werner.c | WernerCompile | rebin Werner stellar atmospheres to match cloudy energy grid
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| stars_werner.c | WernerInterpolate | read in and interpolate on Werner grid of PN atmospheres, by K Volk
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| stars_werner.c | WernerInterpolate_one | get a single Werner PN atmosphere, by K Volk
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| tabden.c | tabden | interpolate on table of points for density with dlaw table command, by K Volk
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| tfidle.c | tauff | compute optical depth where cloud is thin to free-free and plasma freq
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| tfidle.c | tfidle | update some temperature dependent variables
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| tfidle.c | velset | set thermal velocities for all particles in gas
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| thirdparty.c | This | file contains routines (perhaps in modified form) written by third parties. Use and distribution of these works are determined by their respective copyrights.
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| thirdparty_bevington.c | linfit | do linear least squares fit to arrays
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| thirdparty_lapack.c | These | are wrappers for lapack linear algebra routines. There are two versions of the lapack routines - a fortran version that I converted to C with forc to use if nothing else is available (included in the Cloudy distribution), and an option to link into an external lapack library that may be optimized for your machine. By default the tralated C routines will be used. To use your machine's lapack library instead, define the macro LAPACK and link into your library. This is usually done with a command line switch "-DLAPACK" on the compiler command, and the linker option "-llapack"
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| vary_input.c | vary_input | sets input lines to feed into cloudy in optimization runs
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| warnings.c | bangin | called by routine comment to enter surprise into comment stack
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| warnings.c | caunin | called by comment to enter caution into comment stack
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| warnings.c | notein | enter a note about calculation into comment array
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| warnings.c | warnin | enter warnings at the end of the calculations into large stack
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| warnings.c | wcnint | initialize stack or warnings, cautions, notes
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| zero.c | rfield_optac_zero | zero out rfield arrays between certain limits
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| zero.c | zero | zero out or initialize variables, called by cdInit, but also by optimize_func during optimization, this is called before any commands are parsed, called one time per model, at very start
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| zerologic.c | Zerologic | set initial values for logical variables this is called before any commands are parsed
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| zone_startend.c | ZoneEnd | last routine called after all zone calculations, before iter_end_check, upon exit radiation field is for outer edge of current zone
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| zone_startend.c | ZoneStart | set variables that change with each zone, like radius, depth, upon exit flux will be flux at center of zone about to be computed
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